This document aims to support Master Data Management planning by identifying the main data sources for development of a Monitoring System for Access and Benefit Sharing. The table below can be downloaded as a csv file here.
| category | source | type | url | r | python | description |
|---|---|---|---|---|---|---|
| geographic | GBIF | api | https://www.gbif.org/developer/maps | NA | NA | Mapping API for taxonomic data from GBIF |
| geographic | geonames | text | http://download.geonames.org/export/dump/allCountries.zip | NA | NA | 11 million georeferences place names.Field headings in main page read me |
| geographic | api | https://cloud.google.com/maps-platform/ | NA | NA | maps and places services | |
| literature | crossref | api | https://github.com/CrossRef/rest-api-doc | rcrossref | habanero | literature metadata, restful, json, R and python packages, solr search syntax |
| literature | core.ac.uk | api | https://core.ac.uk/docs/#!/all/search | rcoreoa | pyoacore | full texts of scientific literature |
| literature | unpaywall | api | https://unpaywall.org/products/api | roadoi | NA | identify open access publications in crossref |
| literature | Biodiversity Heritage Library | api | https://biodivlib.wikispaces.com/Developer+Tools+and+API | rbhl | NA | Historic biodiversity publications |
| literature | Open Academic Graph | text | https://aminer.org/open-academic-graph | NA | NA | metadata for 330 million scientific publications |
| patent | patentsview | text | http://www.patentsview.org/download/ | NA | NA | US patent data in table format |
| patent | patentsview | api | http://www.patentsview.org/api/patent.html | NA | NA | US patents end point. Limited text search, lookup for inventors or applicants |
| patent | USPTO | xml | http://patents.reedtech.com/parbft.php | NA | NA | US patent applications full text |
| patent | USPTO | xml | http://patents.reedtech.com/pgrbft.php | NA | NA | US granted full text |
| patent | abspat | text | https://storage.googleapis.com/owa/countries_index.zip | NA | NA | machine learning resource, patent documents with country names |
| patent | abspat | text | https://storage.googleapis.com/owa/abspat_index.zip | NA | NA | machine learning resource, patent documents with species names |
| patent | EPO | xml | csc@epo.org | NA | NA | machine learning, Backfile to be ordered |
| patent | WIPO | xml | http://www.wipo.int/patentscope/en/data/ | NA | NA | machine learning, To be ordered 3900 swiss francs |
| patent | EPO | api | http://www.epo.org/searching-for-patents/data/web-services/ops.html#tab-1 | NA | NA | lookup inventor and applicant names, xml/json |
| patent | EPO | database | https://forms.epo.org/service-support/ordering/patstat-order-form.html | NA | NA | PATSTAT Global (raw data) - 2018, SQL database |
| patent | India Patent Office | NA | NA | NA | NA | Full text of india patent documents |
| researcher | National Biodiversity Authority | NA | NA | NA | NA | permit applicant data |
| researcher | ORCID | api | https://orcid.org/organizations/integrators/API | rorcid | python-orcid | enables researcher login and automated retrieval of public profile and publications. R and Python packages. |
| taxonomic | GBIF | text | http://api.gbif.org/v1/occurrence/download/request/0048726-180508205500799.zip | NA | NA | India taxonomic data |
| taxonomic | GBIF | text | http://api.gbif.org/v1/occurrence/download/request/0048727-180508205500799.zip | NA | NA | India full taxonomic data |
| taxonomic | GBIF | api | https://www.gbif.org/developer/summary | rgbif | pygbif | GBIF Restful API |
| taxonomic | BSI | NA | NA | NA | NA | Biological Survey of India |
| taxonomic | IUCN | api | http://apiv3.iucnredlist.org/ | rredlist | NA | API for redlist of endangered species |
| taxonomic | BOLD | api | http://v4.boldsystems.org/index.php/api_home | bold | pybold | API to Barcode of Life Databse |
| taxonomic | GenBank | api | https://www.ncbi.nlm.nih.gov/home/develop/api/ | rentrez | Biopython | DNA sequence data |
| taxonomic | World Register of Marine Species | api | http://www.marinespecies.org/aphia.php?p=webservice | worrms/taxize | NA | marine species data |
| taxonomic | Ocean Biogeographic Information System | api | http://www.iobis.org/manual/api/ | robis | pyobis | Marine species data |
| taxonomic | Global Names Index | api | http://gni.globalnames.org/ | taxize | NA | All known species names including spelling variants |
| taxonomic | Global Names Finder | GO | https://github.com/gnames/gnfinder | NA | NA | Go programme for identifying species names in texts |
| taxonomic | ZSI | NA | NA | NA | NA | Zoological Survey of India |
| taxonomic | French Institute of Pondicherry | NA | NA | NA | NA | NA |
| taxonomic | WII | NA | NA | NA | NA | NA |
| taxonomic | ICAR | NA | NA | NA | NA | NA |
| taxonomic | DST/UGC | NA | NA | NA | NA | NA |
| taxonomic | India Institute of Sciences | NA | NA | NA | NA | NA |
| traditional knowledge | TKDL | NA | http://www.tkdl.res.in/tkdl/langdefault/common/Home.asp?GL=Eng | NA | NA | traditional knowledge data for India |
| traditional knowledge | FRHL | NA | http://envis.frlht.org/bot_search | NA | NA | Database of medicinal plants in India |